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GenCliP
Databases
Cluster
Treeview
Sample
Specification:
1. Current version of GenCLiP is 20081120, updated in 2008-11-20.
2. The source program can be found in the install files and is written with Microsoft visual basic 6.0
language.
3. The databases will be updated every six months. Current
release is 20080718. Please download the zip file, uncompress
and replace the same files in the installation folder.
4. The array file GenCLiP outputs can be used directly as input
for Cluster software, such as Cluster or Spotfire, selecting the
average linkage hierarchical clustering algorithm. And the
output of cluster software can also be used as input for viewer
tool, such as Treeview or MapleTree.
5. Sample is an application of GenCLiP on a list of different
expressed genes derived from microarray analysis between keloids
and normal skin. They include gene list files and original
keywords tables.
Please cite the following article if you found GenCLiP helpful in your work:
Huang ZX, Tian HY, Hu ZF, Zhou YB, Zhao J, Yao KT. GenCLiP: a software program for clustering gene lists by literature profiling and constructing gene co-occurrence networks related to custom keywords. BMC Bioinformatics. 2008 9:308. [Full text] |
